Watkins ER, Penman BS, J, Buckee CO, Maiden MCJ & Gupta S (2015) Vaccination drives changes in metabolic and virulence profiles of Streptococcus pneumoniae. PLOS Pathogens11:e1005034. doi:10.1371/journal.ppat.1005034
Wikramaratna PS, Lourenço J, Klenerman P, Pybus OG & Gupta S (2015) Effects of neutralising antibodies on escape from CD8+ T cell responses in HIV-1 infection. Phil. Trans. R. Soc. B 370:20140290. doi: 10.1098/rstb.2014.0290
Wikramaratna PS, Pybus OG & Gupta S (2014). Contact between bird species of different lifespans can promote the emergence of highly pathogenic avian influenza strains. Proc Natl Acad Sci 111:10767-72. doi: 10.1073/pnas.1401849111
Buckee CO, Recker M, Watkins ER & Gupta S (2011) Role of stochastic processes in maintaining discrete strain structure in antigenically diverse pathogen populations. Proc Natl Acad Sci108:15504-9. doi: 10.1073/pnas.1102445108
Penman B, Pybus OG, Weatherall DJ & Gupta S (2009) Epistatic interactions between genetic disorders of hemoglobin can explain why the sickle cell gene is uncommon in the Mediterranean. Proc Natl Acad Sci 106: 21242-6
Recker, M., Pybus, O.G., Nee, S. & Gupta, S. (2007) The generation of influenza outbreaks by a network of host immune responses against a limited set of antigenic types. Proc Natl Acad Sci U S A. 104:7711-6.
Recker M et al (2004) Transient cross-reactive immune responses can orchestrate antigenic variation in malaria. Nature 429:555-8.
Gupta S et al (1999) Immunity to severe malaria is acquired after one or two exposures. Nature Medicine 5:340?3
Ferguson, N., Anderson, R.M. & Gupta, S. (1999) The effect of antibody dependent enhancement on the transmission dynamics and persistence of multiple strain pathogens. Proc. Nat. Acad. Sci. USA 96: 790?794
Gupta, S., Ferguson, N. & Anderson, R.M. (1998) Chaos, persistence and the evolution of strain structure in populations of antigenically variable infectious agents. Science 240:912?915.
Buckee CO et al (2008) Role of selection in the emergence of lineages and the evolution of virulence in Neisseria meningitidis. Proc Natl Acad Sci U S A. (39):15082-7.
Gupta, S et al (1996) The maintenance of strain structure in populations of recombining infectious agents. Nature Medicine 2(4): 437?442.
Gupta, S., Trenholme, K. Anderson, R.M. & Day, K.P. (1994) Antigenic diversity and the transmission dynamics of Plasmodium falciparum. Science 263, 961-963.
Anderson, R.M., Gupta, S. & May, R.M. (1991) Potential of community-wide chemotherapy or immunotherapy to control the spread of HIV-1. Nature 350: 356-359.
Gupta, S., Anderson, R.M. & May, R.M. (1989) Networks of sexual contacts: implications for the pattern of spread of HIV. AIDS 3: 807-817.