Lythgoe, K.A., A. Gardner, O. Pybus, J. Grove (2017) Short sighted virus evolution and a germline hypothesis of chronic viral infections. Trends in Microbiology 25(5): 336-348
Doekes, H., C. Fraser, K.A. Lythgoe (2017) Effect of the latent reservoir on the evolution of HIV at the within- and between-host scales. PLoS Computational Biology 13(1): e1005228
Lythgoe, K.A., F. Blanquart, L. Pellis, C. Fraser (2016) Large variations in HIV-1 viral load explained by shifting-mosaic metapopulation dynamics. PLoS Biology 14(10): e1002567
Fraser, C., K. Lythgoe*, G.E. Leventhal, G.Shirreff, T.D. Hollingsworth, S. Alizon, S. Bonhoeffer* (2014) Virulence and pathogenesis of HIV-1 infection: an evolutionary perspective. Science 343:124372 (*indicates equal contribution).
Lythgoe, K.A.*, L.Pellis* & C. Fraser (2013) Is HIV short-sighted? Insights from a multi-strain nested model. Evolution 67:2769-82 (*indicates joint first authorship)
Lythgoe, K.A. & C. Fraser (2012) New insights into the evolutionary rate of HIV-1 at the within- and between-host levels. Proc. Roy. Soc. B 279:3367-75
Lythgoe, K.A., L.J. Morrison, A.F. Read & J.D. Barry (2007) Parasite-intrinsic factors can explain ordered progression of trypanosome antigenic variation. Proc. Nat. Acad. Sci. USA 104:8095-8100
Lythgoe, K.A. (2000) The coevolution of parasites with host-acquired immunity and the evolution of sex. Evolution 54:1142-1156